What Databases Are Available for the Analysis of Plant O-Glycosylation
O-glycosylation is a form of glycosylation modification that plays a crucial role in biological processes, particularly in plants. To support the study and analysis of O-glycosylation, researchers have developed a range of specialized databases aimed at collecting, organizing, and disseminating relevant data. The following are representative databases associated with plant O-glycosylation:
1. PlantCAZyme
A database dedicated to plant polysaccharide-degrading enzymes and glycosyltransferases, offering comprehensive information on glycosylation processes in plants.
2. GlycoBase
A large-scale repository of glycan structures derived from diverse biological sources. While primarily focused on humans and mammals, it also includes structural glycan data pertinent to plants.
3. UniCarb-DB
A glycoprotein-focused database that compiles high-quality glycan structures along with associated mass spectrometry data. Although its emphasis lies on human and mammalian glycans, it potentially contains entries relevant to plant glycosylation.
4. GlycoNet
An integrated glycobiology database encompassing data on O-glycosylation, including the relationships among glycan structures, glycosyltransferases, and their respective substrates.
5. CAZy
A comprehensive resource on carbohydrate-active enzymes, providing detailed annotations for enzymes involved in O-glycosylation processes.
6. GlycoEP
A predictive tool designed to identify glycosylation sites within glycoproteins, useful for locating potential O-glycosylation sites in plant proteins.
7. PlantGlyDB
A database centered on plant glycobiology, featuring curated datasets directly related to O-glycosylation.
These databases offer valuable datasets and analytical tools that facilitate a deeper understanding of the functions and mechanisms of O-glycosylation in plant systems.
MtoZ Biolabs, an integrated chromatography and mass spectrometry (MS) services provider.
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